IL_4E8Q_010

3D structure

PDB id

4E8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.84 Å

Loop

Sequence

UGAG*CAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8Q_010 not in the Motif Atlas

Homologous match to IL_5J02_008

Geometric discrepancy: 0.117

The information below is about IL_5J02_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8Q|1|A|U|172
4E8Q|1|A|G|173
4E8Q|1|A|A|174
4E8Q|1|A|G|175
*
4E8Q|1|A|C|190
4E8Q|1|A|A|191
4E8Q|1|A|A|192
4E8Q|1|A|A|193
4E8Q|1|A|G|194

Current chains

Chain A

Group IIC intron

Nearby chains