IL_4E8Q_014

3D structure

PDB id

4E8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.84 Å

Loop

Sequence

UAUG*CUAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8Q_014 not in the Motif Atlas

Geometric match to IL_3IGI_012

Geometric discrepancy: 0.1063

The information below is about IL_3IGI_012

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_95104.1

Basepair signature

cWW-tWH-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

4E8Q|1|A|U|332
4E8Q|1|A|A|333
4E8Q|1|A|U|334
4E8Q|1|A|G|335
*
4E8Q|1|A|C|346
4E8Q|1|A|U|347
4E8Q|1|A|A|348
4E8Q|1|A|A|349
4E8Q|1|A|G|350

Current chains

Chain A

Group IIC intron

Nearby chains