IL_4E8R_003

3D structure

PDB id

4E8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

4E8R|1|A|A|106, 4E8R|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8R_003 not in the Motif Atlas

Homologous match to IL_5J02_003

Geometric discrepancy: 0.1032

The information below is about IL_5J02_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8R|1|A|C|76
4E8R|1|A|A|77
4E8R|1|A|A|78
4E8R|1|A|G|79
*
4E8R|1|A|U|103
4E8R|1|A|G|104
4E8R|1|A|A|105
4E8R|1|A|A|106
4E8R|1|A|G|107
4E8R|1|A|G|108
4E8R|1|A|A|109
4E8R|1|A|A|110
4E8R|1|A|G|111

Current chains

Chain A

Group IIC intron

Nearby chains