IL_4E8R_008

3D structure

PDB id

4E8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

AUG*CUUUCUGCCAAAGU

Length

17 nucleotides

Bulged bases

4E8R|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8R|1|A|A|167
4E8R|1|A|U|168
4E8R|1|A|G|169
*
4E8R|1|A|C|197
4E8R|1|A|U|198
4E8R|1|A|U|199
4E8R|1|A|U|200
4E8R|1|A|C|201
4E8R|1|A|U|202
4E8R|1|A|G|203
4E8R|1|A|C|204
4E8R|1|A|C|205
4E8R|1|A|A|206
4E8R|1|A|A|207
4E8R|1|A|A|208
4E8R|1|A|G|209
4E8R|1|A|U|210

Current chains

Chain A

Group IIC intron

Nearby chains