IL_4E8T_003

3D structure

PDB id

4E8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

4E8T|1|A|A|106, 4E8T|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8T_003 not in the Motif Atlas

Homologous match to IL_5J02_003

Geometric discrepancy: 0.1116

The information below is about IL_5J02_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8T|1|A|C|76
4E8T|1|A|A|77
4E8T|1|A|A|78
4E8T|1|A|G|79
*
4E8T|1|A|U|103
4E8T|1|A|G|104
4E8T|1|A|A|105
4E8T|1|A|A|106
4E8T|1|A|G|107
4E8T|1|A|G|108
4E8T|1|A|A|109
4E8T|1|A|A|110
4E8T|1|A|G|111

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3'