IL_4E8T_008

3D structure

PDB id

4E8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

UG*CUUUCUGCCAAAG

Length

15 nucleotides

Bulged bases

4E8T|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8T_008 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.224

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8T|1|A|U|168
4E8T|1|A|G|169
*
4E8T|1|A|C|197
4E8T|1|A|U|198
4E8T|1|A|U|199
4E8T|1|A|U|200
4E8T|1|A|C|201
4E8T|1|A|U|202
4E8T|1|A|G|203
4E8T|1|A|C|204
4E8T|1|A|C|205
4E8T|1|A|A|206
4E8T|1|A|A|207
4E8T|1|A|A|208
4E8T|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains