IL_4E8T_012

3D structure

PDB id

4E8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

UAGUAC*GGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8T|1|A|U|298
4E8T|1|A|A|299
4E8T|1|A|G|300
4E8T|1|A|U|301
4E8T|1|A|A|302
4E8T|1|A|C|303
*
4E8T|1|A|G|316
4E8T|1|A|G|317
4E8T|1|A|A|318
4E8T|1|A|A|319
4E8T|1|A|G|320

Current chains

Chain A

Group IIC intron

Nearby chains