IL_4E8T_013

3D structure

PDB id

4E8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

UAUG*CUAAG

Length

9 nucleotides

Bulged bases

4E8T|1|A|U|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4E8T_013 not in the Motif Atlas

Geometric match to IL_6DVK_001

Geometric discrepancy: 0.148

The information below is about IL_6DVK_001

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_87739.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

10

Unit IDs

4E8T|1|A|U|332
4E8T|1|A|A|333
4E8T|1|A|U|334
4E8T|1|A|G|335
*
4E8T|1|A|C|346
4E8T|1|A|U|347
4E8T|1|A|A|348
4E8T|1|A|A|349
4E8T|1|A|G|350

Current chains

Chain A

Group IIC intron

Nearby chains