IL_4ERD_002

3D structure

PDB id

4ERD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the C-terminal domain of Tetrahymena telomerase protein p65 in complex with stem IV of telomerase RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.59 Å

Loop

Sequence

UUCG*UUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4ERD|1|C|U|127
4ERD|1|C|U|128
4ERD|1|C|C|141
4ERD|1|C|G|142
*
4ERD|1|D|U|127
4ERD|1|D|U|128
4ERD|1|D|C|141
4ERD|1|D|G|142

Current chains

Chain C

5'-R(P*GP*GP*UP*CP*GP*AP*CP*AP*UP*CP*UP*UP*CP*GP*GP*AP*UP*GP*GP*AP*CP*C)-3'

Chain D

5'-R(P*GP*GP*UP*CP*GP*AP*CP*AP*UP*CP*UP*UP*CP*GP*GP*AP*UP*GP*GP*AP*CP*C)-3'

Nearby chains

Chain A

Telomerase associated protein p65

Chain B

Telomerase associated protein p65