IL_4ERL_005

3D structure

PDB id

4ERL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the lysine riboswitch bound to a lysine-glycine dipeptide

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

4ERL|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ERL_005 not in the Motif Atlas

Homologous match to IL_3D0U_005

Geometric discrepancy: 0.0832

The information below is about IL_3D0U_005

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

4ERL|1|A|C|81
4ERL|1|A|G|82
*
4ERL|1|A|U|106
4ERL|1|A|G|107
4ERL|1|A|G|108

Current chains

Chain A

Lysine riboswitch RNA

Nearby chains