IL_4ERL_007

3D structure

PDB id

4ERL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the lysine riboswitch bound to a lysine-glycine dipeptide

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ERL_007 not in the Motif Atlas

Geometric match to IL_9AXU_020

Geometric discrepancy: 0.1351

The information below is about IL_9AXU_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

4ERL|1|A|U|116
4ERL|1|A|G|117
4ERL|1|A|A|118
*
4ERL|1|A|U|130
4ERL|1|A|U|131
4ERL|1|A|A|132

Current chains

Chain A

Lysine riboswitch RNA

Nearby chains