IL_4FAQ_003

3D structure

PDB id

4FAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

4FAQ|1|A|A|106, 4FAQ|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAQ_003 not in the Motif Atlas

Homologous match to IL_5J02_003

Geometric discrepancy: 0.0965

The information below is about IL_5J02_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAQ|1|A|C|76
4FAQ|1|A|A|77
4FAQ|1|A|A|78
4FAQ|1|A|G|79
*
4FAQ|1|A|U|103
4FAQ|1|A|G|104
4FAQ|1|A|A|105
4FAQ|1|A|A|106
4FAQ|1|A|G|107
4FAQ|1|A|G|108
4FAQ|1|A|A|109
4FAQ|1|A|A|110
4FAQ|1|A|G|111

Current chains

Chain A

Group IIC intron

Nearby chains