IL_4FAQ_006

3D structure

PDB id

4FAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

AUAUGAGG*UAAAU

Length

13 nucleotides

Bulged bases

4FAQ|1|A|U|152, 4FAQ|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAQ_006 not in the Motif Atlas

Homologous match to IL_5J02_005

Geometric discrepancy: 0.1922

The information below is about IL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAQ|1|A|A|149
4FAQ|1|A|U|150
4FAQ|1|A|A|151
4FAQ|1|A|U|152
4FAQ|1|A|G|153
4FAQ|1|A|A|154
4FAQ|1|A|G|155
4FAQ|1|A|G|156
*
4FAQ|1|A|U|221
4FAQ|1|A|A|222
4FAQ|1|A|A|223
4FAQ|1|A|A|224
4FAQ|1|A|U|225

Current chains

Chain A

Group IIC intron

Nearby chains