IL_4FAQ_007

3D structure

PDB id

4FAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

UAGGUA*UACAGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAQ_007 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3951

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4FAQ|1|A|U|158
4FAQ|1|A|A|159
4FAQ|1|A|G|160
4FAQ|1|A|G|161
4FAQ|1|A|U|162
4FAQ|1|A|A|163
*
4FAQ|1|A|U|214
4FAQ|1|A|A|215
4FAQ|1|A|C|216
4FAQ|1|A|A|217
4FAQ|1|A|G|218
4FAQ|1|A|A|219

Current chains

Chain A

Group IIC intron

Nearby chains