IL_4FAQ_011

3D structure

PDB id

4FAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GAGGU*AAGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAQ_011 not in the Motif Atlas

Geometric match to IL_3IGI_010

Geometric discrepancy: 0.0798

The information below is about IL_3IGI_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96788.1

Basepair signature

cWW-tHW-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4FAQ|1|A|G|267
4FAQ|1|A|A|268
4FAQ|1|A|G|269
4FAQ|1|A|G|270
4FAQ|1|A|U|271
*
4FAQ|1|A|A|282
4FAQ|1|A|A|283
4FAQ|1|A|G|284
4FAQ|1|A|U|285
4FAQ|1|A|C|286

Current chains

Chain A

Group IIC intron

Nearby chains