IL_4FAR_002

3D structure

PDB id

4FAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

CUAAC*GGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAR_002 not in the Motif Atlas

Homologous match to IL_5J02_002

Geometric discrepancy: 0.1433

The information below is about IL_5J02_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAR|1|A|C|70
4FAR|1|A|U|71
4FAR|1|A|A|72
4FAR|1|A|A|73
4FAR|1|A|C|74
*
4FAR|1|A|G|113
4FAR|1|A|G|114
4FAR|1|A|A|115
4FAR|1|A|C|116
4FAR|1|A|G|117

Current chains

Chain A

Group IIC intron

Nearby chains