IL_4FAR_006

3D structure

PDB id

4FAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

AUAUGAGG*UAAAU

Length

13 nucleotides

Bulged bases

4FAR|1|A|U|152, 4FAR|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAR_006 not in the Motif Atlas

Homologous match to IL_5J02_005

Geometric discrepancy: 0.1775

The information below is about IL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAR|1|A|A|149
4FAR|1|A|U|150
4FAR|1|A|A|151
4FAR|1|A|U|152
4FAR|1|A|G|153
4FAR|1|A|A|154
4FAR|1|A|G|155
4FAR|1|A|G|156
*
4FAR|1|A|U|221
4FAR|1|A|A|222
4FAR|1|A|A|223
4FAR|1|A|A|224
4FAR|1|A|U|225

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

Group IIC intron