IL_4FAR_009

3D structure

PDB id

4FAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

UG*CUUUCUGCCAAAG

Length

15 nucleotides

Bulged bases

4FAR|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAR_009 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.1906

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAR|1|A|U|168
4FAR|1|A|G|169
*
4FAR|1|A|C|197
4FAR|1|A|U|198
4FAR|1|A|U|199
4FAR|1|A|U|200
4FAR|1|A|C|201
4FAR|1|A|U|202
4FAR|1|A|G|203
4FAR|1|A|C|204
4FAR|1|A|C|205
4FAR|1|A|A|206
4FAR|1|A|A|207
4FAR|1|A|A|208
4FAR|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains