IL_4FAR_011

3D structure

PDB id

4FAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

GAGGU*AAGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAR_011 not in the Motif Atlas

Geometric match to IL_3IGI_010

Geometric discrepancy: 0.0893

The information below is about IL_3IGI_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96788.1

Basepair signature

cWW-tHW-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4FAR|1|A|G|267
4FAR|1|A|A|268
4FAR|1|A|G|269
4FAR|1|A|G|270
4FAR|1|A|U|271
*
4FAR|1|A|A|282
4FAR|1|A|A|283
4FAR|1|A|G|284
4FAR|1|A|U|285
4FAR|1|A|C|286

Current chains

Chain A

Group IIC intron

Nearby chains