IL_4FAU_003

3D structure

PDB id

4FAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.87 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

4FAU|1|A|A|106, 4FAU|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAU_003 not in the Motif Atlas

Homologous match to IL_5J02_003

Geometric discrepancy: 0.0934

The information below is about IL_5J02_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAU|1|A|C|76
4FAU|1|A|A|77
4FAU|1|A|A|78
4FAU|1|A|G|79
*
4FAU|1|A|U|103
4FAU|1|A|G|104
4FAU|1|A|A|105
4FAU|1|A|A|106
4FAU|1|A|G|107
4FAU|1|A|G|108
4FAU|1|A|A|109
4FAU|1|A|A|110
4FAU|1|A|G|111

Current chains

Chain A

Group IIC intron

Nearby chains