IL_4FAU_009

3D structure

PDB id

4FAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.87 Å

Loop

Sequence

UG*CUUUCUGCCAAAG

Length

15 nucleotides

Bulged bases

4FAU|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAU_009 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.1869

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAU|1|A|U|168
4FAU|1|A|G|169
*
4FAU|1|A|C|197
4FAU|1|A|U|198
4FAU|1|A|U|199
4FAU|1|A|U|200
4FAU|1|A|C|201
4FAU|1|A|U|202
4FAU|1|A|G|203
4FAU|1|A|C|204
4FAU|1|A|C|205
4FAU|1|A|A|206
4FAU|1|A|A|207
4FAU|1|A|A|208
4FAU|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains