IL_4FAU_013

3D structure

PDB id

4FAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

2.87 Å

Loop

Sequence

UAUG*CUAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAU_013 not in the Motif Atlas

Geometric match to IL_3IGI_012

Geometric discrepancy: 0.1662

The information below is about IL_3IGI_012

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_95104.1

Basepair signature

cWW-tWH-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

4FAU|1|A|U|332
4FAU|1|A|A|333
4FAU|1|A|U|334
4FAU|1|A|G|335
*
4FAU|1|A|C|346
4FAU|1|A|U|347
4FAU|1|A|A|348
4FAU|1|A|A|349
4FAU|1|A|G|350

Current chains

Chain A

Group IIC intron

Nearby chains