IL_4FAX_006

3D structure

PDB id

4FAX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAUGAGG*UAAU*U

Length

13 nucleotides

Bulged bases

4FAX|1|A|U|152

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAX_006 not in the Motif Atlas

Homologous match to IL_5J02_005

Geometric discrepancy: 0.1992

The information below is about IL_5J02_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAX|1|A|A|149
4FAX|1|A|U|150
4FAX|1|A|A|151
4FAX|1|A|U|152
4FAX|1|A|G|153
4FAX|1|A|A|154
4FAX|1|A|G|155
4FAX|1|A|G|156
*
4FAX|1|A|U|221
4FAX|1|A|A|222
4FAX|1|A|A|224
4FAX|1|A|U|225
*
4FAX|1|A|U|225

Current chains

Chain A

Group IIC intron

Nearby chains