IL_4FAX_008

3D structure

PDB id

4FAX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CUUUCUGCCAAG*G

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FAX_008 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.1957

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAX|1|A|U|168
4FAX|1|A|G|169
*
4FAX|1|A|C|197
4FAX|1|A|U|198
4FAX|1|A|U|199
4FAX|1|A|U|200
4FAX|1|A|C|201
4FAX|1|A|U|202
4FAX|1|A|G|203
4FAX|1|A|C|204
4FAX|1|A|C|205
4FAX|1|A|A|206
4FAX|1|A|A|208
4FAX|1|A|G|209
*
4FAX|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains