IL_4FB0_008

3D structure

PDB id

4FB0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UG*CUUUCUGCCAAAG

Length

15 nucleotides

Bulged bases

4FB0|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4FB0_008 not in the Motif Atlas

Homologous match to IL_5J02_007

Geometric discrepancy: 0.2233

The information below is about IL_5J02_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FB0|1|A|U|168
4FB0|1|A|G|169
*
4FB0|1|A|C|197
4FB0|1|A|U|198
4FB0|1|A|U|199
4FB0|1|A|U|200
4FB0|1|A|C|201
4FB0|1|A|U|202
4FB0|1|A|G|203
4FB0|1|A|C|204
4FB0|1|A|C|205
4FB0|1|A|A|206
4FB0|1|A|A|207
4FB0|1|A|A|208
4FB0|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains