IL_4GKJ_013

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GKJ_013 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1969

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4GKJ|1|A|G|287
4GKJ|1|A|G|288
*
4GKJ|1|A|U|299
4GKJ|1|A|G|300
4GKJ|1|A|G|301
4GKJ|1|A|C|302
4GKJ|1|A|C|303

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16