IL_4GKJ_040

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAG*CUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCUAG,CUAGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GKJ_040 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3242

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4GKJ|1|A|G|975
4GKJ|1|A|C|976
4GKJ|1|A|U|977
4GKJ|1|A|A|978
4GKJ|1|A|G|979
*
4GKJ|1|A|C|1021
4GKJ|1|A|U|1022
4GKJ|1|A|A|1023
4GKJ|1|A|G|1024
4GKJ|1|A|C|1025

Current chains

Chain A

16S rRNA

Nearby chains