IL_4GKJ_060

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GKJ_060 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.0792

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4GKJ|1|A|C|1413
4GKJ|1|A|G|1414
4GKJ|1|A|A|1415
4GKJ|1|A|A|1416
4GKJ|1|A|G|1417
*
4GKJ|1|A|C|1443
4GKJ|1|A|G|1444
4GKJ|1|A|A|1445
4GKJ|1|A|G|1446

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20