3D structure

PDB id
4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UGG*CUGA
Length
7 nucleotides
Bulged bases
4GKJ|1|A|G|383
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4GKJ_063 not in the Motif Atlas
Homologous match to IL_6CZR_128
Geometric discrepancy: 0.188
The information below is about IL_6CZR_128
Detailed Annotation
Single bulged G, near cWW
Broad Annotation
Single bulged G, near cWW
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

4GKJ|1|A|U|370
4GKJ|1|A|G|371
4GKJ|1|A|G|372
*
4GKJ|1|A|C|381
4GKJ|1|A|U|382
4GKJ|1|A|G|383
4GKJ|1|A|A|384

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16

Coloring options:


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