IL_4GKK_033

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GKK_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0449

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4GKK|1|A|C|762
4GKK|1|A|A|763
4GKK|1|A|A|764
4GKK|1|A|A|765
4GKK|1|A|C|766
*
4GKK|1|A|G|782
4GKK|1|A|G|783
4GKK|1|A|U|784
4GKK|1|A|A|785
4GKK|1|A|G|786

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11