IL_4GKK_040
3D structure
- PDB id
- 4GKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CCC,GGG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4GKK_040 not in the Motif Atlas
- Geometric match to IL_4E5C_001
- Geometric discrepancy: 0.234
- The information below is about IL_4E5C_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
4GKK|1|A|C|1005
4GKK|1|A|C|1006
4GKK|1|A|C|1007
*
4GKK|1|A|G|1014
4GKK|1|A|G|1015
4GKK|1|A|G|1016
Current chains
- Chain A
- 16S rRNA
Nearby chains
No other chains within 10ÅColoring options: