3D structure

PDB id
4GKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCC*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4GKK_040 not in the Motif Atlas
Geometric match to IL_4E5C_001
Geometric discrepancy: 0.234
The information below is about IL_4E5C_001
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

4GKK|1|A|C|1005
4GKK|1|A|C|1006
4GKK|1|A|C|1007
*
4GKK|1|A|G|1014
4GKK|1|A|G|1015
4GKK|1|A|G|1016

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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