3D structure

PDB id
4GKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4GKK_059 not in the Motif Atlas
Homologous match to IL_4LFB_060
Geometric discrepancy: 0.104
The information below is about IL_4LFB_060
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

4GKK|1|A|G|1398
4GKK|1|A|G|1399
4GKK|1|A|A|1400
4GKK|1|A|G|1401
*
4GKK|1|A|U|1458
4GKK|1|A|G|1459
4GKK|1|A|A|1460
4GKK|1|A|C|1461

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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