IL_4GKK_066
3D structure
- PDB id
- 4GKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- 4GKK|1|A|A|407, 4GKK|1|A|G|408
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4GKK_066 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.168
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.3
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
4GKK|1|A|G|404
4GKK|1|A|G|405
4GKK|1|A|A|406
4GKK|1|A|A|407
4GKK|1|A|G|408
4GKK|1|A|A|409
4GKK|1|A|A|410
4GKK|1|A|G|411
*
4GKK|1|A|U|422
4GKK|1|A|G|423
4GKK|1|A|U|424
4GKK|1|A|A|425
4GKK|1|A|A|426
4GKK|1|A|A|427
4GKK|1|A|C|428
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
Coloring options: