IL_4GMA_005

3D structure

PDB id

4GMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the adenosylcobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4GMA_005 not in the Motif Atlas

Geometric match to IL_5TBW_127

Geometric discrepancy: 0.1952

The information below is about IL_5TBW_127

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4GMA|1|Z|C|102
4GMA|1|Z|C|103
4GMA|1|Z|C|104
*
4GMA|1|Z|G|136
4GMA|1|Z|G|137
4GMA|1|Z|G|138

Current chains

Chain Z

Adenosylcobalamin riboswitch

Nearby chains