IL_4IO9_010
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAC*GAGUGAAAGAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 4IO9|1|X|G|514, 4IO9|1|X|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IO9_010 not in the Motif Atlas
- Homologous match to IL_7A0S_009
- Geometric discrepancy: 0.0705
- The information below is about IL_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
4IO9|1|X|G|492
4IO9|1|X|A|493
4IO9|1|X|A|494
4IO9|1|X|C|495
*
4IO9|1|X|G|506
4IO9|1|X|A|507
4IO9|1|X|G|508
4IO9|1|X|U|509
4IO9|1|X|G|510
4IO9|1|X|A|511
4IO9|1|X|A|512
4IO9|1|X|A|513
4IO9|1|X|G|514
4IO9|1|X|A|515
4IO9|1|X|G|516
4IO9|1|X|A|517
4IO9|1|X|A|518
4IO9|1|X|C|519
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain P
- 50S ribosomal protein L22
- Chain R
- 50S ribosomal protein L24
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