IL_4IO9_036
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAGUG*CUCAAG
- Length
- 13 nucleotides
- Bulged bases
- 4IO9|1|X|C|1152, 4IO9|1|X|A|1154
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IO9_036 not in the Motif Atlas
- Geometric match to IL_4WF9_039
- Geometric discrepancy: 0.1156
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
4IO9|1|X|C|1029
4IO9|1|X|U|1030
4IO9|1|X|C|1031
4IO9|1|X|A|1032
4IO9|1|X|G|1033
4IO9|1|X|U|1034
4IO9|1|X|G|1035
*
4IO9|1|X|C|1150
4IO9|1|X|U|1151
4IO9|1|X|C|1152
4IO9|1|X|A|1153
4IO9|1|X|A|1154
4IO9|1|X|G|1155
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain E
- 50S ribosomal protein L6
- Chain G
- 50S ribosomal protein L13
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