IL_4IO9_039

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

4IO9|1|X|A|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4IO9|1|X|C|1054
4IO9|1|X|A|1055
4IO9|1|X|U|1056
4IO9|1|X|A|1057
4IO9|1|X|G|1058
4IO9|1|X|A|1059
4IO9|1|X|C|1060
4IO9|1|X|A|1061
4IO9|1|X|G|1062
4IO9|1|X|C|1063
4IO9|1|X|C|1064
*
4IO9|1|X|G|1117
4IO9|1|X|G|1118
4IO9|1|X|U|1119
4IO9|1|X|C|1120
4IO9|1|X|G|1121
4IO9|1|X|A|1122
4IO9|1|X|G|1123

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6