IL_4IO9_041
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUG*CACCC
- Length
- 10 nucleotides
- Bulged bases
- 4IO9|1|X|U|1072
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4IO9_041 not in the Motif Atlas
- Homologous match to IL_5J7L_384
- Geometric discrepancy: 0.3444
- The information below is about IL_5J7L_384
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_33835.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4IO9|1|X|G|1069
4IO9|1|X|G|1070
4IO9|1|X|U|1071
4IO9|1|X|U|1072
4IO9|1|X|G|1073
*
4IO9|1|X|C|1087
4IO9|1|X|A|1088
4IO9|1|X|C|1089
4IO9|1|X|C|1090
4IO9|1|X|C|1091
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L11
- Chain J
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L25
Coloring options: