IL_4IO9_048

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAC*GAG

Length

6 nucleotides

Bulged bases

4IO9|1|X|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_048 not in the Motif Atlas

Homologous match to IL_7A0S_044

Geometric discrepancy: 0.1193

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4IO9|1|X|U|1232
4IO9|1|X|A|1233
4IO9|1|X|C|1234
*
4IO9|1|X|G|1241
4IO9|1|X|A|1242
4IO9|1|X|G|1243

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21