IL_4IO9_060

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*UCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_060 not in the Motif Atlas

Geometric match to IL_5J7L_333

Geometric discrepancy: 0.1903

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4IO9|1|X|C|1491
4IO9|1|X|A|1492
4IO9|1|X|A|1493
4IO9|1|X|G|1494
*
4IO9|1|X|U|1530
4IO9|1|X|C|1531
4IO9|1|X|A|1532
4IO9|1|X|G|1533

Current chains

Chain X

23S ribosomal RNA

Nearby chains