IL_4IO9_078

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4IO9|1|X|A|1921, 4IO9|1|X|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_078 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1042

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4IO9|1|X|C|1917
4IO9|1|X|G|1918
4IO9|1|X|A|1919
4IO9|1|X|A|1920
4IO9|1|X|A|1921
4IO9|1|X|U|1922
4IO9|1|X|U|1923
4IO9|1|X|C|1924
4IO9|1|X|C|1925
4IO9|1|X|U|1926
4IO9|1|X|U|1927
4IO9|1|X|G|1928
*
4IO9|1|X|C|1944
4IO9|1|X|C|1945
4IO9|1|X|U|1946
4IO9|1|X|G|1947

Current chains

Chain X

23S ribosomal RNA

Nearby chains