IL_4IO9_088

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_088 not in the Motif Atlas

Homologous match to IL_7A0S_081

Geometric discrepancy: 0.0853

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4IO9|1|X|C|2329
4IO9|1|X|G|2330
4IO9|1|X|A|2331
4IO9|1|X|G|2332
*
4IO9|1|X|C|2343
4IO9|1|X|G|2344
4IO9|1|X|A|2345
4IO9|1|X|G|2346

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27