IL_4IO9_096

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4IO9|1|X|G|2555, 4IO9|1|X|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_096 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.081

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4IO9|1|X|C|2489
4IO9|1|X|U|2490
4IO9|1|X|C|2491
*
4IO9|1|X|G|2553
4IO9|1|X|C|2554
4IO9|1|X|G|2555
4IO9|1|X|A|2556
4IO9|1|X|G|2557

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32