IL_4IO9_109

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAC*GCAG

Length

7 nucleotides

Bulged bases

4IO9|1|Y|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_109 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.1883

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

4IO9|1|Y|C|19
4IO9|1|Y|A|20
4IO9|1|Y|C|21
*
4IO9|1|Y|G|66
4IO9|1|Y|C|67
4IO9|1|Y|A|68
4IO9|1|Y|G|69

Current chains

Chain Y

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain S

50S ribosomal protein L25

Chain X

Large subunit ribosomal RNA; LSU rRNA