IL_4IO9_116

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACC*GCGU

Length

7 nucleotides

Bulged bases

4IO9|1|X|C|939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4IO9_116 not in the Motif Atlas

Homologous match to IL_7A0S_026

Geometric discrepancy: 0.4256

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

4IO9|1|X|A|862
4IO9|1|X|C|863
4IO9|1|X|C|864
*
4IO9|1|X|G|938
4IO9|1|X|C|939
4IO9|1|X|G|940
4IO9|1|X|U|941

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L30