IL_4JI0_044

3D structure

PDB id

4JI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

AGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGG,CCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI0_044 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.2446

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4JI0|1|A|A|1001
4JI0|1|A|G|1002
4JI0|1|A|G|1003
*
4JI0|1|A|C|1038
4JI0|1|A|C|1039
4JI0|1|A|U|1040

Current chains

Chain A

16S rRNA

Nearby chains