IL_4JI0_047
3D structure
- PDB id
- 4JI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- GCUGCAU*AUG(2MG)C
- Length
- 12 nucleotides
- Bulged bases
- 4JI0|1|A|C|1054
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4JI0_047 not in the Motif Atlas
- Geometric match to IL_4WFL_001
- Geometric discrepancy: 0.3889
- The information below is about IL_4WFL_001
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.3
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
4JI0|1|A|G|1050
4JI0|1|A|C|1051
4JI0|1|A|U|1052
4JI0|1|A|G|1053
4JI0|1|A|C|1054
4JI0|1|A|A|1055
4JI0|1|A|U|1056
*
4JI0|1|A|A|1204
4JI0|1|A|U|1205
4JI0|1|A|G|1206
4JI0|1|A|2MG|1207
4JI0|1|A|C|1208
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- ribosomal protein S3
- Chain J
- ribosomal protein S10
- Chain N
- ribosomal protein S14
Coloring options: