IL_4JI0_066

3D structure

PDB id

4JI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GAAACCCC*GGGACUGAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI0_066 not in the Motif Atlas

Homologous match to IL_6CZR_360

Geometric discrepancy: 0.2332

The information below is about IL_6CZR_360

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI0|1|A|G|450
4JI0|1|A|A|451
4JI0|1|A|A|452
4JI0|1|A|A|453
4JI0|1|A|C|454
4JI0|1|A|C|455
4JI0|1|A|C|456
4JI0|1|A|C|457
*
4JI0|1|A|G|475
4JI0|1|A|G|476
4JI0|1|A|G|477
4JI0|1|A|A|478
4JI0|1|A|C|479
4JI0|1|A|U|480
4JI0|1|A|G|481
4JI0|1|A|A|482
4JI0|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16