IL_4JI0_068

3D structure

PDB id

4JI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GGGAACCCGGGU*GCCUGGGGUGCCCCGCGAGGGGAGCCC

Length

39 nucleotides

Bulged bases

4JI0|1|A|G|1003|||A, 4JI0|1|A|G|1023, 4JI0|1|A|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI0|1|A|G|1002
4JI0|1|A|G|1003
4JI0|1|A|G|1003|||A
4JI0|1|A|A|1004
4JI0|1|A|A|1005
4JI0|1|A|C|1006
4JI0|1|A|C|1007
4JI0|1|A|C|1008
4JI0|1|A|G|1009
4JI0|1|A|G|1010
4JI0|1|A|G|1011
4JI0|1|A|U|1012
*
4JI0|1|A|G|1017
4JI0|1|A|C|1018
4JI0|1|A|C|1019
4JI0|1|A|U|1020
4JI0|1|A|G|1021
4JI0|1|A|G|1022
4JI0|1|A|G|1023
4JI0|1|A|G|1024
4JI0|1|A|U|1025
4JI0|1|A|G|1026
4JI0|1|A|C|1027
4JI0|1|A|C|1028
4JI0|1|A|C|1029
4JI0|1|A|C|1030
4JI0|1|A|G|1030|||A
4JI0|1|A|C|1030|||B
4JI0|1|A|G|1030|||C
4JI0|1|A|A|1030|||D
4JI0|1|A|G|1031
4JI0|1|A|G|1032
4JI0|1|A|G|1033
4JI0|1|A|G|1034
4JI0|1|A|A|1035
4JI0|1|A|G|1036
4JI0|1|A|C|1037
4JI0|1|A|C|1038
4JI0|1|A|C|1039

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

ribosomal protein S19