IL_4JI1_041

3D structure

PDB id

4JI1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CCCGG*CUGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JI1_041 not in the Motif Atlas

Geometric match to IL_4DB2_001

Geometric discrepancy: 0.3585

The information below is about IL_4DB2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61988.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4JI1|1|A|C|1006
4JI1|1|A|C|1007
4JI1|1|A|C|1008
4JI1|1|A|G|1009
4JI1|1|A|G|1010
*
4JI1|1|A|C|1019
4JI1|1|A|U|1020
4JI1|1|A|G|1021
4JI1|1|A|G|1022

Current chains

Chain A

16S rRNA

Nearby chains